> select '\\';
\\
When using IO redirection, mysql commandline automatically enters --silent or --batch mode, and auto escapes the output. -r (--raw) is the fix.
mysql -r --silent
> select '\\';
\
mysql -r -D digicert_com < somequery.txt > Desktop/r-queries.txt
source(s): http://bugs.mysql.com/bug.php?id=35122
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